API Reference

Aligner

pyfamsa.Aligner

A single FAMSA aligner.

Sequence

pyfamsa.Sequence

A digitized sequence.

Alignment

pyfamsa.Alignment	An alignment, stored as a list of GappedSequence objects.
pyfamsa.GappedSequence	A gapped sequence, storing a single row in an alignment.

GuideTree

pyfamsa.GuideTree

A guide tree generated from several sequences.