API Reference

Classes

Aligner	A single FAMSA aligner.
Sequence	A digitized sequence.
GappedSequence	A gapped sequence, storing a single row in an alignment.
Alignment	An alignment, stored as a list of GappedSequence objects.
GuideTree	A guide tree generated from several sequences.

Functions

famsa_info

Get information about the embedded FAMSA version.

Constants

MIQS	A scoring matrix to use for biological sequence alignments.
PFASUM31	A scoring matrix to use for biological sequence alignments.
PFASUM43	A scoring matrix to use for biological sequence alignments.
PFASUM60	A scoring matrix to use for biological sequence alignments.
FAMSA_ALPHABET	str(object='') -> str str(bytes_or_buffer[, encoding[, errors]]) -> str