API Reference
=============

.. currentmodule:: pyfamsa

.. toctree::
   :hidden:

   aligner <aligner>
   sequence <sequence>
   alignment <alignment>
   guide_tree <guide_tree>


.. only:: html

    Aligner
    -------

    .. autosummary::
        :nosignatures:

        pyfamsa.Aligner

    Sequence
    --------

    .. autosummary::
        :nosignatures:

        pyfamsa.Sequence


    Alignment
    ---------

    .. autosummary::
        :nosignatures:

        pyfamsa.Alignment
        pyfamsa.GappedSequence


    GuideTree
    ---------

    .. autosummary::
        :nosignatures:

        pyfamsa.GuideTree