API Reference
=============

.. currentmodule:: pyfamsa

.. toctree::
   :caption: API Reference
   :hidden:

   Aligner <aligner>
   Sequence <sequence>
   Gapped Sequence <gapped_sequence>
   Alignment <alignment>
   Guide Tree <guide_tree>
   Utilities <utilities>

Classes
-------

.. autosummary::
    :nosignatures:

    Aligner
    Sequence
    GappedSequence
    Alignment
    GuideTree

Functions
---------

.. autosummary::
    :nosignatures:

    famsa_info

Constants
---------

.. autosummary::
    :nosignatures:

    MIQS