Utilities
=========

.. currentmodule:: pyfamsa

Constants
---------

.. data:: MIQS
    :type: scoring_matrices.ScoringMatrix

    The MIQS scoring matrix proposed by Yamada & Tomii (2014), used by 
    default in FAMSA for scoring alignments.

.. data:: FAMSA_ALPHABET
    :type: str

    The alphabet used by FAMSA to encode input sequences.


Functions
---------

.. autofunction:: pyfamsa.famsa_info