Index _ | A | B | C | D | F | G | I | M | N | S _ __getitem__() (pyfamsa.Alignment method) __init__() (pyfamsa.Aligner method) (pyfamsa.Alignment method) (pyfamsa.GappedSequence method) (pyfamsa.Sequence method) __len__() (pyfamsa.Alignment method) A align() (pyfamsa.Aligner method) align_profiles() (pyfamsa.Aligner method) Aligner (class in pyfamsa) Alignment (class in pyfamsa) B build_tree() (pyfamsa.Aligner method) C copy() (pyfamsa.Alignment method) (pyfamsa.GappedSequence method) (pyfamsa.Sequence method) D dump() (pyfamsa.GuideTree method) dumps() (pyfamsa.GuideTree method) F FAMSA_ALPHABET (in module pyfamsa) famsa_info() (in module pyfamsa) G gapped_size (pyfamsa.GappedSequence attribute) GappedSequence (class in pyfamsa) GuideTree (class in pyfamsa) I id (pyfamsa.GappedSequence attribute) (pyfamsa.Sequence attribute) M MIQS (in module pyfamsa) N names (pyfamsa.GuideTree attribute) S scoring_matrix (pyfamsa.Aligner attribute) Sequence (class in pyfamsa) sequence (pyfamsa.GappedSequence attribute) (pyfamsa.Sequence attribute) size (pyfamsa.GappedSequence attribute) (pyfamsa.Sequence attribute)