GuideTree¶
- class pyfamsa.GuideTree¶
A guide tree generated from several sequences.
Guide trees are binary trees, stored as an array which contains the two children nodes for each node (or -1 for leaves). Nodes can be iterated upon.
- dump(file)¶
Write the tree into a file in Newick format.
- Parameters:
file (
str
,bytes, `os.PathLike
or file-like object) – The path to a file, or a file-like object open in binary mode.